Sample Size for Survival Analysis Tests in PASS
PASS contains over 25 tools for sample size estimation and power analysis of survival methods, including logrank tests, non-inferiority, group-sequential, and conditional power, among others. Each procedure is easy-to-use and is carefully validated for accuracy. If you need help on how to use PASS sample size estimation software, use the links below to jump to a survival topic. For each procedure, only a brief summary of the procedure is given. For more details about a particular procedure, we recommend you download and install the free trial to really understand how to use PASS software.
- Technical Details
- An Example Setup and Output
- Logrank Tests for Survival Curve Inequality
- Other Tests for Survival Curve Inequality
- Non-Inferiority Tests for Two Survival Curves
- Equivalence Tests for Two Survival Curves
- Superiority by a Margin Tests for Two Survival Curves
- Group-Sequential Logrank Tests
- Conditional Power of Logrank Tests
- Cox Regression
For most of the sample size procedures in PASS for survival, the user may choose to solve for sample size, power, or the population effect size in some manner. In a typical survival test procedure where the goal is to estimate the sample size, the user enters power, alpha, and the desired population survival parameters. The procedure is run and the output shows a summary of the entries as well as the sample size estimate. A summary statement is given, as well as references to the articles from which the formulas for the result were obtained.
For many of the parameters (e.g., power, alpha, sample size, survival, etc.), multiple values may be entered in a single run. When this is done, estimates are made for every combination of entered values. A numeric summary of these is results is produced as well as easy-to-read sample size or power curve graphs.
This page provides a brief description of the tools that are available in PASS for power and sample size analysis of survival methods. If you would like to examine the formulas and technical details relating to a specific PASS procedure, we recommend you download and install the free trial of the software, open the desired survival procedure, and click on the help button in the top right corner to view the complete documentation of the procedure. There you will find summaries, formulas, references, discussions, technical details, examples, and validation against published articles for the procedure.
When the PASS software is first opened, the user is presented with the PASS Home window. From this window the desired procedure is selected from the menus, the category tree on the left, or with a procedure search. The procedure opens and the desired entries are made. When you click the Calculate button the results are produced. You can easily navigate to any part of the output with the navigation pane on the left.
PASS Home Window
Logrank Tests Procedure Window
PASS Output Window
Power Curve for the Logrank Tests Procedure
There are several procedures in PASS for determining sample size or power for inequality tests of two survival curves:
- Logrank Tests (Input Hazard Rates)
- Logrank Tests (Input Median Survival Times)
- Logrank Tests (Input Proportion Surviving)
- Logrank Tests (Input Mortality)
- Tests for Two Survival Curves Using Cox’s Proportional Hazards Model
- Tests for the Difference of Two Hazard Rates Assuming an Exponential Model
- Logrank Tests Accounting for Competing Risks
For several of these procedures, you may specify the proportion of individuals in the control and treatment groups, the accrual time, and the total time. In the first four, you can also specify an accrual pattern, and proportions of subjects lost to follow-up or switching groups. Where appropriate, the number of events is also reported.
A simulation based procedure is used to evaluate sample size and power for each of the following tests for comparing two survival curves:
- Modified Peto-Peto
The sample size and power analysis procedures in PASS for non-inferiority of two survival curves are:
- Non-Inferiority Logrank Tests
- Non-Inferiority Tests for Two Survival Curves Using Cox’s Proportional Hazards Model
- Non-Inferiority Tests for the Difference of Two Hazard Rates Assuming an Exponential Model
The first of the three procedures computes the sample size and power for non-inferiority tests under the assumption of proportional hazards. Accrual time and follow-up time are included among the parameters to be set. The non-inferiority logrank test is the test that is anticipated for data analysis.
The Cox’s Proportional Hazards Model procedure is documented in Chow, Shao, and Wang (2008) which summarizes the work of Schoenfeld (1981, 1983).
The exponential model procedure is based on the unconditional method of Chow, Shao, and Wang (2008) which, in turn, is based on the conditional methods of Lachin and Foulkes (1986). The conditional procedure does not extend to non-inferiority, non-zero null, or equivalence tests as easily as the unconditional method does.
There are two survival equivalence procedures in PASS. The first procedure uses the Cox’s proportional hazards model and the second assumes an exponential model.
Sample Size Curve for Survival Equivalence with Hazard Ratio on X Axis
There are two survival procedures for showing superiority by a margin in PASS. The first procedure uses the Cox’s proportional hazards model and the second assumes an exponential model.
In PASS, there is an analytic procedure for group-sequential logrank tests as well as four simulation procedures. The simulation procedures differ only in the survival input (hazard rates, median survival times, proportion surviving, or mortality). The following test methods are available in the simulation procedures:
- Modified Peto-Peto
A variety of spending function options are available in the simulation procedures, including Hwang-Shi-DeCani, O’Brien-Fleming, and Pocock types. Either the T-test or the Mann-Whitney-Wilcoxon test may be examined. For one-sided tests, significance and futility boundaries can be produced. The spacing of the looks can be equal or custom specified. The distributions of each of the groups under the null and alternative hypotheses can be specified directly using over ten distributions including normal, exponential, Gamma, Uniform, Beta, and Cauchy. Boundaries can also be input directly to verify alpha- and/or beta-spending properties. Futility boundaries can be binding or non-binding.
Group-Sequential Logrank Test Boundary Plot with 5 Looks
In sequential designs, one or more intermediate analyses of the emerging data are conducted to evaluate whether the experiment should be continued. This may be done to conserve resources or to allow a data monitoring board to evaluate safety and efficacy when subjects are entered in a staggered fashion over a long period of time. Conditional power (a frequentist concept) is the probability that the final result will be significant, given the data obtained up to the time of the interim look. Predictive power (a Bayesian concept) is the result of averaging the conditional power over the posterior distribution of effect size. Both of these methods fall under the heading of stochastic curtailment techniques.
This procedure computes conditional and predicted power for the case when a logrank test is used to compare the hazard rate of a treatment group to that of a control group.
Cox proportional hazards regression models the relationship between the hazard function λ(t|X) of survival time and k covariates using the formula
log(λ(t|X) / λ0(t|X)) = β1X1 + β2X2 + … + βkXk
where λ0(t|X) is the baseline hazard. Note that the covariates may be discrete or continuous.
The Cox Regression procedure in PASS calculates power and sample size for testing the hypothesis that β1=0 versus the alternative that β1=B . Note that β1 is the change in log hazard for a one-unit change in X1 when the rest of the covariates are held constant. The procedure assumes that this hypothesis will be tested using the Wald (or score) statistic.
Click here to watch this Power Analysis Calculation Video.